SELECT 
  cscart_product_prices.product_id, 
  MIN(
    IF(
      cscart_product_prices.percentage_discount = 0, 
      cscart_product_prices.price, 
      cscart_product_prices.price - (
        cscart_product_prices.price * cscart_product_prices.percentage_discount
      )/ 100
    )
  ) AS price 
FROM 
  cscart_product_prices 
WHERE 
  cscart_product_prices.product_id IN (
    303, 304, 305, 328, 310, 311, 312, 313, 
    314, 315, 316, 317, 318, 319, 320, 321, 
    327, 291, 292, 307, 296, 297, 293, 294, 
    308, 302, 306, 309, 298, 299, 300, 301, 
    295, 329, 326, 325, 324, 322, 323
  ) 
  AND cscart_product_prices.lower_limit = 1 
  AND cscart_product_prices.usergroup_id IN (0, 1) 
GROUP BY 
  cscart_product_prices.product_id

Query time 0.00069

JSON explain

{
  "query_block": {
    "select_id": 1,
    "nested_loop": [
      {
        "table": {
          "table_name": "cscart_product_prices",
          "access_type": "range",
          "possible_keys": [
            "usergroup",
            "product_id",
            "lower_limit",
            "usergroup_id"
          ],
          "key": "product_id",
          "key_length": "3",
          "used_key_parts": ["product_id"],
          "rows": 39,
          "filtered": 97.31543732,
          "index_condition": "cscart_product_prices.product_id in (303,304,305,328,310,311,312,313,314,315,316,317,318,319,320,321,327,291,292,307,296,297,293,294,308,302,306,309,298,299,300,301,295,329,326,325,324,322,323)",
          "attached_condition": "cscart_product_prices.lower_limit = 1 and cscart_product_prices.usergroup_id in (0,1)"
        }
      }
    ]
  }
}